ÌÇÐÄÊÓƵ

Scientists uncover 'superfamily' of bacterial predator proteins

Scientists have identified a new type of protein in bacteria that could change our understanding of how these organisms interact with their environments.

A new study, in Nature Communications, focuses on a protein called PopA, found in the bacterial predator Bdellovibrio bacteriovorus. The protein forms a unique fivefold structure, unlike the usual single or three-part structures seen in similar proteins.

An international research team, led by University of Birmingham scientists, used advanced imaging techniques to reveal that PopA has a bowl-like shape that can trap parts of the bacterial membrane inside it.

When PopA—an outer membrane protein (OMP)—is introduced into E. coli bacteria, it causes damage to their membranes. This suggests that PopA might play a role in how Bdellovibrio attacks and consumes other bacteria, while its ability to trap lipids (fats) suggests a new way bacteria might interact with their surroundings.

Structural analysis and AI-driven searches showed that PopA homologs—found across diverse bacterial species—form tetramers, hexamers, and even nonamers, all sharing the signature lipid‑trapping features. This suggests a widespread, previously unrecognized "superfamily" of proteins.

Lead author Professor Andrew Lovering, from the University of Birmingham, commented, "Our discovery is significant because it challenges what scientists thought they knew about bacterial proteins. The unique structure and function of PopA suggest that bacteria have more complex ways of interacting with their environments than previously understood.

"This could open new possibilities for understanding how bacteria function and interact with their environments—leading to new ways to target harmful bacteria with important implications for medicine and biotechnology."

The study also identified another new family of proteins that form ring-like structures, further expanding our knowledge of bacterial proteins and suggesting that the mechanism to combine into rings might be more common than previously thought.

Using a combination of X‑ray crystallography, cryo-electron microscopy, and molecular dynamics, the team demonstrated that PopA, previously known as Bd0427, forms a central lipid-trapping cavity, which is unusual, given that the textbook model of membrane protein formation is centered on excluding lipids.

OMPs perform a wide range of functions including signaling, host cell adhesion, catalysis of crucial reactions, and transport of solutes/nutrients into and out of organelles within the human body. Understanding the natural variability of OMPs may have benefits ranging from antibacterial development to synthetic biology.